MADICES awesome resources

Data

Linked Data Modeling Language: Define schema as yaml files and generate JSON-Schema, RDF, OWL, GraphQL, Python dataclasses
Versioning of data schema: Translate your data with lenses: Blog posts discusses the challenges and potential solutions for dealing with evolving data schema.
Basic tabular data annotation from frictionless data
rdf-tabular. Also see this talk
Research Object Crates, a schema.org-based container specification for the serialization of research data.
ELN file format, an archive file specification based on Research Object Crates.
PyStow - for reproducible downloading of data in various computational Workflows in Python
rdflib - Python libary to deal with RDF
LinkML -- see above
Ontology Development Kit - a toolbox of various ontology related tools such as ROBOT, owltools, dosdp-tools and many more, bundled as a docker image, a set of executable workflows for managing your ontologies continuous integration, quality control, releases and dynamic imports
iochem-bd - The Computational Chemistry Results Repository, using CML as internal data format
Wikidata - a collaboratively edited multilingual knowledge graph
Pipeline Pilot - Proprietary software to build ETL, data science/analytics workflows in a graphical user interface
OPTIMADE - consortium that aims to make materials databases interoperable by developing a specification for a common REST API

NFDI4Chem: Initiative to build an open and FAIR infrastructure for research data management in chemistry with an associated Knowledge Base on how to be FAIR in chemistry.
Blue Obelisk: Internet group promoting reusable chemistry via open source software development. 📄 📄
GO FAIR Chemistry Implementation Network: Goals are "to enhance the open, FAIR and effective communication of chemical knowledge within the chemical sciences and between chemistry and other disciplines" and "to enable chemists and chemistry to contribute to the achievement of the UN Global Sustainable Development goals" (direct quotes from the website). 📄.
Chemistry Research Data IG: Interest Group of the Research Data Alliance (RDA) that aims to foster exchange on chemical data.
RDA/CODATA Materials Data, Infrastructure & Interoperability IG: Interest Group of the Research Data Alliance (RDA) that aims to foster exchange on material data.
Materials Research Data Alliance (MaRDA): a community network focused on developing the open, accessible, and interoperable materials data that fuels the Materials Genome Initiative (MGI).
The ELN Consortium: a consortium of ELN vendors interested in improving interoperability

Awesome Materials Informatics: In contrast to this compilation, Awesome Materials Informatics focuses more on computational materials science.
FAIRsharing.org domain collections for Chemistry and Semantic Assets for Materials Science.
FAIRsFAIR ACME-FAIR Guide: Defining Data Interoperability Frameworks - one section in a 7-part set of recommendations for ensuring FAIR practice across domains.

JCAMP - IUPAC recommended data exchange format with standardized vocabularies for some fields
FAIRSpec - standard for sharing spectroscopic data
DataCite metadata schema - A set of mandatory metadata that must be registered with the DataCite Metadata Store when minting a DOI persistent identifier for a dataset
AniML - Analytical Information Markup Language (AnIML) is an open ASTM XML standard for storing and sharing any analytical chemistry data.
Chemical Markup Language CML - is an approach to managing molecular information using XML
NeXus format - common data format for neutron, x-ray, and muon science
JSON-LD - publishing linked data as JSON files on the Web
GEMD data model - Graphical Expression of Materials Data that links together materials, the processes that produced them, and the measurements that characterize them
chemrof - data model for managing information about chemical entities, ranging from atoms through molecules to complex mixtures.

MOP - Molecular process ontology
RXNO - name reaction ontology
OWL - Web ontology language
ChEBI - Chemical Entities of Biological Interest is a chemical database and ontology of molecular entities

Chemotion - Electronic lab notebook, focussed on organic chemistry, developed at KIT
eLabFTW - Electronic lab notebook, field agnostic, developed by Deltablot